Contents:
DEFAULT_ULTRAMETRIC_TREE_TYPE
DEFAULT_ULTRAMETRIC_TREE_TYPE_STRING
DEFAULT_HIERARCHY
DEFAULT_PARTITIONING_METHOD
DEFAULT_PARTITIONING_METHOD_STRING
DEFAULT_CONFIG
SHiP
SHiP()
fit()
fit_predict()
get_tree()
tree_type
hierarchy
partitioning_method
config
labels_
partitioning_runtime
tree_construction_runtime
partitioning()
construct_base_tree()
data
trees
build_DCTree()
convert_from_DCTree()
build_from_DCTree()
build_HST()
convert_from_HST()
build_from_HST()
convert_from_MLPackTree()
build_from_MLPackTree()
parse_json_to_tree()
constructUltrametricTree()
set_parents()
assign_node_sizes()
check_tree_validity()
UltrametricTreeNode
UltrametricTreeNode()
to_json()
from_json()
id
cost
children
parent
size
UltrametricTree
UltrametricTree()
move_childs_with_same_cost_as_parent()
increase_parent_cost_if_too_small()
root
operator<<()
convertUltrametricTreeNodeToNode()
Annotation
Annotation()
operator<()
operator>()
cost_decrease
center
tree_node
orig_node
level
Node
Node()
k
is_cluster
low
high
anno
is_merger
representative
k_marking
closest_center
Tree
Tree()
cost_function()
get_distance_matrix()
kcenter_cut()
kcenter_elbow_cut()
threshold_elbow_cut()
threshold_cut()
stability_cut()
normalized_stability_cut()
threshold_q_coverage()
get_lca_prune_solution()
get_elbow_k()
index_order
sorted_nodes
k_solutions
max_cost
costs
cost_decreases
setup_fast_index()
compute_sorted_nodes()
compute_sorted_costs()
assign_nodes_their_k_values()
create_centroids_hierarchy()
annotate_tree()
sq_euclid_dist()
update_pointers()
optimize_annotations()
compute_representatives()
convert_to_real_nodes_solution()
mark_tree()
k_solution()
get_k_solution_helper()
label_tree()
extract_labels()
label_clusters_helper_merge()
label_clusters_merge()
threshold_cut_main()
trim_stem()
threshold()
mark_tree_from_pruned()
stability()
split_size()
bottom_up_cluster()
bottom_up_cluster_normalized()
PartitioningMethod
K
Elbow
Threshold
ThresholdElbow
QCoverage
QCoverageElbow
QStem
QStemElbow
LcaNoiseElbow
LcaNoiseElbowNoTriangle
MedianOfElbows
MeanOfElbows
Stability
NormalizedStability
partitioning_method_to_string()
string_to_partitioning_method()
get_available_partitioning_methods()
get_available_partitioning_methods_as_strings()
partitioningMethodStrings
elbow_triangle()
elbow_line_dist()
Point
x
y
label_clusters()
clean_tree()
prune_tree()
prune_tree_fast()
to_lower()
find_normalized_key()
get_config_value()
validate_value_in_range()
get_config_value_in_range()
check_key_occurs()
always_false_v
LOG_INFO
LOG_WARN
LOG_ERROR
LogLevel
INFO
WARNING
ERROR
setLogLevel()
logLevelStrings
CURRENT_LOG_LEVEL
Logger
Logger()
~Logger()
os
enabled
measure_runtime()